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Detailed information for vg0235815991:

Variant ID: vg0235815991 (JBrowse)	Variation Type: SNP
Chromosome: chr02	Position: 35815991
Reference Allele: T	Alternative Allele: G
Primary Allele: T	Secondary Allele: G

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 1.00, others allele: 0.00, population size: 322. )

Flanking Sequence (100 bp) in Reference Genome:

CAGCGTGGCAATTACAATGCAGCATGATTCCATGCATAACTTTCACAGGTGATATCGACTGAGTGGGTTTTGGCACCAACTTAGGAGTTAGAAAAAACAA[T/G]
AACAGACCAAAAAAAATCTGGATTCTGAAAATAAAGGAATGAAGGCACAAAGCATACTTCAGGATAGATTCAACTGTCCTTTGCAAATAGTCTGGTCGAT

Reverse complement sequence

ATCGACCAGACTATTTGCAAAGGACAGTTGAATCTATCCTGAAGTATGCTTTGTGCCTTCATTCCTTTATTTTCAGAATCCAGATTTTTTTTGGTCTGTT[A/C]
TTGTTTTTTCTAACTCCTAAGTTGGTGCCAAAACCCACTCAGTCGATATCACCTGTGAAAGTTATGCATGGAATCATGCTGCATTGTAATTGCCACGCTG

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: