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Detailed information for vg0232306661:

Variant ID: vg0232306661 (JBrowse)	Variation Type: SNP
Chromosome: chr02	Position: 32306661
Reference Allele: G	Alternative Allele: A
Primary Allele: G	Secondary Allele: A

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 0.99, others allele: 0.00, population size: 291. )

Flanking Sequence (100 bp) in Reference Genome:

CTTTAGGAAAGTGTGTTTAGTGTCCGATAAGGACTTTATATTTTCCTTTTATCTTTAGGTTAGTTTCTTTCTTGTCTGACAAGGACTTGTATCAACCCAT[G/A]
GGTATAAATATGTACACCCGGGGTCTATGTAATATATCCTCACGATCAATACAATTCGGCGCATCGCCACCTTTTACCTTTTCTACTTTATTTTATCGTC

Reverse complement sequence

GACGATAAAATAAAGTAGAAAAGGTAAAAGGTGGCGATGCGCCGAATTGTATTGATCGTGAGGATATATTACATAGACCCCGGGTGTACATATTTATACC[C/T]
ATGGGTTGATACAAGTCCTTGTCAGACAAGAAAGAAACTAACCTAAAGATAAAAGGAAAATATAAAGTCCTTATCGGACACTAAACACACTTTCCTAAAG

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: