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Detailed information for vg0220790529:

Variant ID: vg0220790529 (JBrowse)Variation Type: SNP
Chromosome: chr02Position: 20790529
Reference Allele: AAlternative Allele: T
Primary Allele: ASecondary Allele: T

Inferred Ancestral Allele : A (evidence from allele frequency in Oryza rufipogon: A: 1.00, others allele: 0.00, population size: 241. )

Flanking Sequence (100 bp) in Reference Genome:


AGCATTTCTCTTTTGGAGCGTTCTGGAAATTTTCGGAAGTTCCGAAAAGAATTTTTAGAAGTTCCGAAAATACACAGAACCGTGTTTGAGCGTTCTGGAA[A/T]
TTTTCGGAAGTTCCGAAAATACACAGAACCGTTTGAGAGCTCTCTGGAAATTTTCGGAAGTTCCGAAAATACACAGAAGCGTTCTGGAAATTTTCGGAAG

Reverse complement sequence

CTTCCGAAAATTTCCAGAACGCTTCTGTGTATTTTCGGAACTTCCGAAAATTTCCAGAGAGCTCTCAAACGGTTCTGTGTATTTTCGGAACTTCCGAAAA[T/A]
TTCCAGAACGCTCAAACACGGTTCTGTGTATTTTCGGAACTTCTAAAAATTCTTTTCGGAACTTCCGAAAATTTCCAGAACGCTCCAAAAGAGAAATGCT

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: