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Detailed information for vg0212064522:

Variant ID: vg0212064522 (JBrowse)	Variation Type: SNP
Chromosome: chr02	Position: 12064522
Reference Allele: T	Alternative Allele: A
Primary Allele: T	Secondary Allele: A

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 0.99, others allele: 0.00, population size: 336. )

Flanking Sequence (100 bp) in Reference Genome:

GTCACGCTTTTACAGCTCCCTGAAGAAAACTATGCTCTCATATTTCTCTTTATAAATTGCAGAGGGGACCTTAGACTTTTGCTCATCCCAGAAATCCTCC[T/A]
GATGCTGTTCATCTTCAAGAACAAGCTATATGTTCGCTGCAGAAAAAGAATACAAAGATCACCAGAGGCATGGAGACTGCGCCTAAGTCACAAAGTTTAC

Reverse complement sequence

GTAAACTTTGTGACTTAGGCGCAGTCTCCATGCCTCTGGTGATCTTTGTATTCTTTTTCTGCAGCGAACATATAGCTTGTTCTTGAAGATGAACAGCATC[A/T]
GGAGGATTTCTGGGATGAGCAAAAGTCTAAGGTCCCCTCTGCAATTTATAAAGAGAAATATGAGAGCATAGTTTTCTTCAGGGAGCTGTAAAAGCGTGAC

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: