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Detailed information for vg0136606599:

Variant ID: vg0136606599 (JBrowse)	Variation Type: SNP
Chromosome: chr01	Position: 36606599
Reference Allele: T	Alternative Allele: A
Primary Allele: T	Secondary Allele: A

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 1.00, others allele: 0.00, population size: 300. )

Flanking Sequence (100 bp) in Reference Genome:

ATAAAATATGGTAAGAACTGCAAGTACTACATGCATGTCCATCTACCAAAAATACAACAATAACCATGATTTGACTTGATTACACCTTAATATATAAAAA[T/A]
TGACTCCAAAAGTTTCATCTCACTAATTTACATTATCCTAATCTGTTAAGCTGGTGGAACAGACCGCGCTAAGGTGTCACTGCTTTGCAAACCACTTTTC

Reverse complement sequence

GAAAAGTGGTTTGCAAAGCAGTGACACCTTAGCGCGGTCTGTTCCACCAGCTTAACAGATTAGGATAATGTAAATTAGTGAGATGAAACTTTTGGAGTCA[A/T]
TTTTTATATATTAAGGTGTAATCAAGTCAAATCATGGTTATTGTTGTATTTTTGGTAGATGGACATGCATGTAGTACTTGCAGTTCTTACCATATTTTAT

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: