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Detailed information for vg0134393590:

Variant ID: vg0134393590 (JBrowse)	Variation Type: SNP
Chromosome: chr01	Position: 34393590
Reference Allele: T	Alternative Allele: C
Primary Allele: C	Secondary Allele: T

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 1.00, others allele: 0.00, population size: 286. )

Flanking Sequence (100 bp) in Reference Genome:

AATAAACTCATTAGTCCCTTAATCGTATTCATCATTACACCAAAACCCACTAGGGGGATAAATACAACTTCAATATTTTCTCCTCACTCTTTAATATGAA[T/C]
AGATTTGTGAAGGCAAGGGTATATTGGTCATTTCATGCGCCCAGTCCATGTTGGCATGCACATGTGGTGGTGTTAACGACCAAATTTGGTAGATCATAGA

Reverse complement sequence

TCTATGATCTACCAAATTTGGTCGTTAACACCACCACATGTGCATGCCAACATGGACTGGGCGCATGAAATGACCAATATACCCTTGCCTTCACAAATCT[A/G]
TTCATATTAAAGAGTGAGGAGAAAATATTGAAGTTGTATTTATCCCCCTAGTGGGTTTTGGTGTAATGATGAATACGATTAAGGGACTAATGAGTTTATT

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: