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Detailed information for vg0125510468:

Variant ID: vg0125510468 (JBrowse)	Variation Type: SNP
Chromosome: chr01	Position: 25510468
Reference Allele: T	Alternative Allele: C
Primary Allele: T	Secondary Allele: C

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 0.99, C: 0.02, others allele: 0.00, population size: 236. )

Flanking Sequence (100 bp) in Reference Genome:

CGAATAGACCGAAAAGACCGAATTATCAAAAAATGTCTAAATACAATCTACAATCCACTATGTTTAATAGGATTAAACTCTAATTTTCACATCCCTACTT[T/C]
TTCTAGGCATGCAACCTAATAAGAGTTTTTACTCATAAATGCTTACGAATTTCTTTGTGATTTTTTGTTGAAAATTTCCATTATTTCTTTTCATATATGA

Reverse complement sequence

TCATATATGAAAAGAAATAATGGAAATTTTCAACAAAAAATCACAAAGAAATTCGTAAGCATTTATGAGTAAAAACTCTTATTAGGTTGCATGCCTAGAA[A/G]
AAGTAGGGATGTGAAAATTAGAGTTTAATCCTATTAAACATAGTGGATTGTAGATTGTATTTAGACATTTTTTGATAATTCGGTCTTTTCGGTCTATTCG

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: