Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Detailed information for vg0111338686:

Variant ID: vg0111338686 (JBrowse)	Variation Type: SNP
Chromosome: chr01	Position: 11338686
Reference Allele: G	Alternative Allele: A
Primary Allele: G	Secondary Allele: A

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 1.01, others allele: 0.00, population size: 109. )

Flanking Sequence (100 bp) in Reference Genome:

CACAAATTGAATTAATTTTTTTAATCCTTTTTAAATGGGCTTTAATTAGATTTAATCTTGTAAAATTCATAATAAATTCATTTGAAGTCAGAATGAGGCC[G/A]
TTCAAGTCTCAAAATTCATCTAAAATTATGATCTACATGTTTGTTTACTTTTTATGTATTGTCTATTTGGTTTTTATTAGTCTTTTTCCTCGTTTTGCGT

Reverse complement sequence

ACGCAAAACGAGGAAAAAGACTAATAAAAACCAAATAGACAATACATAAAAAGTAAACAAACATGTAGATCATAATTTTAGATGAATTTTGAGACTTGAA[C/T]
GGCCTCATTCTGACTTCAAATGAATTTATTATGAATTTTACAAGATTAAATCTAATTAAAGCCCATTTAAAAAGGATTAAAAAAATTAATTCAATTTGTG

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: