12 variations found. Os05g0442700/LOC_Os05g37080 (No apical meristem protein; putative; expressed), ranging from 21,668,093 bp to 21,669,730 bp (including 0 kb upstream and 0 kb downstream of the gene).
| Gene ID | Annotation |
|---|---|
| LOC_Os05g37080 | No apical meristem protein, putative, expressed; RAP ID: Os05g0442700; MSU ID: LOC_Os05g37080 |
| MSU ID | RAP ID | Symbol | Name | Explanation | Recommended Gene Symbol | Recommended Gene Name |
|---|---|---|---|---|---|---|
| LOC_Os05g37080 | Os05g0442700 | ONAC012, ONAC12 | NAC domain-containing protein 012, NAC domain-containing protein 12 | NAC12 | NAC DOMAIN-CONTAINING PROTEIN 12 |
The expression data is from the CREP database. And the expression value is log2-transformed. Move the mouse over the cells of the heat map to get detailed tissue information and expression values.
| Color | Explain | Details |
|---|---|---|
| red | High impact variants defined by snpEff | 'STOP_LOST', 'START_LOST', 'STOP_GAINED', 'FRAME_SHIFT' et. al., the details can be found at http://snpef f.sourceforge.net/SnpEff_manual.html#eff. |
| purple | 'Damaging' or 'probably damaging' non-synonymous SNPs defined by PolyPhen-2 | This is a qualitative result of nonsynonymous SNP annotation, where 'damaging' or 'probably damaging' means that the variant is more likely to affect protein function. Details can be found here. |
| Var ID | Chrom | Position | Primary Allele | Secondary Allele | Primary Allele Frequency | DEL Frequency | Var | GWAS Results | Effect |
|---|---|---|---|---|---|---|---|---|---|
| vg0521668114 (J) | chr05 | 21668114 | AT | A | 63.00% | 0.00% | A -> AT | NA |
LOC_Os05g37080.1 Alt: AT| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os05g37070.1 Alt: AT| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 52.111; most accessible tissue: Minghui63 flower, score: 74.230 |
| vg0521668157 (J) | chr05 | 21668157 | T | A | 98.50% | 0.00% | T -> A | NA |
LOC_Os05g37080.1 Alt: A| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os05g37070.1 Alt: A| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 51.694; most accessible tissue: Zhenshan97 root, score: 72.188 |
| vg0521668219 (J) | chr05 | 21668219 | C | T | 99.70% | 0.00% | C -> T | NA |
LOC_Os05g37080.1 Alt: T| 3_prime_UTR_variant MODIFIER(snpEff)
LOC_Os05g37070.1 Alt: T| upstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 53.570; most accessible tissue: Callus, score: 85.035 |
| vg0521668295 (J) | chr05 | 21668295 | A | C | 98.70% | 0.00% | A -> C | NA |
LOC_Os05g37080.1 Alt: C| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os05g37070.1 Alt: C| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 61.858; most accessible tissue: Callus, score: 85.035 |
| vg0521668459 (J) | chr05 | 21668459 | T | G | 99.50% | 0.00% | T -> G | NA |
LOC_Os05g37080.1 Alt: G| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
The average chromatin accessibility score: 79.142; most accessible tissue: Callus, score: 90.999 |
| vg0521668548 (J) | chr05 | 21668548 | C | G | 64.50% | 0.00% | G -> C | NA |
LOC_Os05g37080.1 Alt: C| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
The average chromatin accessibility score: 84.467; most accessible tissue: Zhenshan97 root, score: 93.351 |
| vg0521668590 (J) | chr05 | 21668590 | G | A | 99.90% | 0.00% | G -> A | NA |
LOC_Os05g37080.1 Alt: A| synonymous_variant LOW(snpEff)
LOC_Os05g37070.1 Alt: A| upstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 84.234; most accessible tissue: Zhenshan97 root, score: 93.819 |
| vg0521668882 (J) | chr05 | 21668882 | G | A | 54.90% | 0.13% | A -> G |
N Alt: DEL/silent_mutation(CooVar)
LOC_Os05g37070.1 Alt: G| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os05g37080.1 Alt: G| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 85.945; most accessible tissue: Zhenshan97 root, score: 95.711 |
|
| vg0521668988 (J) | chr05 | 21668988 | T | TA | 98.30% | 0.00% | T -> TA | NA |
LOC_Os05g37070.1 Alt: TA| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os05g37080.1 Alt: TA| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 88.246; most accessible tissue: Callus, score: 96.795 |
| vg0521669298 (J) | chr05 | 21669298 | C | A | 96.60% | 0.00% | C -> A | NA |
LOC_Os05g37080.1 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/benign(PolyPhen-2)
The average chromatin accessibility score: 90.320; most accessible tissue: Zhenshan97 young leaf, score: 95.387 |
| vg0521669576 (J) | chr05 | 21669576 | C | A | 64.50% | 0.00% | A -> C | NA |
LOC_Os05g37080.1 Alt: C| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
The average chromatin accessibility score: 92.548; most accessible tissue: Zhenshan97 root, score: 97.835 |
| STR0521668989 (J) | chr05 | 21668989 | AAA | AAAA | 98.60% | 0.00% | AAA -> AAAA | NA |
|