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Phenotype and GWAS Information:

Agronomic Traits

Note: All the agronomic trait is from the article Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection.

Metabolic Traits

Note: All the metabolic trait is from the article Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism. Some metabolics have two replications, the second replication is end with '_2', like 'mr1002_2'.

Sorry, variation is wrong, please check.

Search Results:

The detailed information about mr1572 can be find at here.

GWAS Results:

Note: If the P-value of Linear Regression (LR) or Linear Mixed Model (LMM) ≤ 1e-5 or the rank ≤ 20000, the results are saved. Only the LMM results are plotted below.

Significant Candidate Loci (Lead SNP):

Variation IDVariation ID V6ChromosomePositionLR P-value LMM P-value
vg0721447320 sf0721446327 7 21447320 7.47E-07 7.46E-07
vg0101354617 sf0101353617 1 1354617 1.96E-06 1.97E-06
vg0818081691 sf0818078978 8 18081691 2.70E-06 2.71E-06
vg1206436039 sf1206434929 12 6436039 3.40E-06 3.40E-06