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Detailed information for vg1125246561:

Variant ID: vg1125246561 (JBrowse)Variation Type: SNP
Chromosome: chr11Position: 25246561
Reference Allele: AAlternative Allele: G
Primary Allele: ASecondary Allele: G

Inferred Ancestral Allele : A (evidence from allele frequency in Oryza rufipogon: A: 1.00, others allele: 0.00, population size: 336. )

Flanking Sequence (100 bp) in Reference Genome:


GAACATATGCCGACAAATGCTAACCAACTACCAGACATGTTTGTCATCTTGCATTATTTTTGTTTTATTGGTTTTAATCAACATCCTTATATATAAACCC[A/G]
TTTGAGGCCATCGAGTGCTTGTGTGCTTAGAATTTTGCAGGAGTAGATTTTAACTATTTGTTTTCCTATAGAGTATTTCAATATGTGTAAATTTGCTAAT

Reverse complement sequence

ATTAGCAAATTTACACATATTGAAATACTCTATAGGAAAACAAATAGTTAAAATCTACTCCTGCAAAATTCTAAGCACACAAGCACTCGATGGCCTCAAA[T/C]
GGGTTTATATATAAGGATGTTGATTAAAACCAATAAAACAAAAATAATGCAAGATGACAAACATGTCTGGTAGTTGGTTAGCATTTGTCGGCATATGTTC

Allele Frequencies:

Allele Effect: