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Detailed information for vg1125246491:

Variant ID: vg1125246491 (JBrowse)	Variation Type: SNP
Chromosome: chr11	Position: 25246491
Reference Allele: C	Alternative Allele: G
Primary Allele: C	Secondary Allele: G

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 1.00, others allele: 0.00, population size: 327. )

Flanking Sequence (100 bp) in Reference Genome:

GTACTCTAAGCTGCACAAGGGACACCTTGGGATGTTAGTTTAAGCACAAACCAAGGTTTGTAAGGTTCAAGAACATATGCCGACAAATGCTAACCAACTA[C/G]
CAGACATGTTTGTCATCTTGCATTATTTTTGTTTTATTGGTTTTAATCAACATCCTTATATATAAACCCATTTGAGGCCATCGAGTGCTTGTGTGCTTAG

Reverse complement sequence

CTAAGCACACAAGCACTCGATGGCCTCAAATGGGTTTATATATAAGGATGTTGATTAAAACCAATAAAACAAAAATAATGCAAGATGACAAACATGTCTG[G/C]
TAGTTGGTTAGCATTTGTCGGCATATGTTCTTGAACCTTACAAACCTTGGTTTGTGCTTAAACTAACATCCCAAGGTGTCCCTTGTGCAGCTTAGAGTAC

Allele Frequencies:

Allele Effect: