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Detailed information for vg1125246339:

Variant ID: vg1125246339 (JBrowse)	Variation Type: SNP
Chromosome: chr11	Position: 25246339
Reference Allele: G	Alternative Allele: A
Primary Allele: G	Secondary Allele: A

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 1.00, others allele: 0.00, population size: 309. )

Flanking Sequence (100 bp) in Reference Genome:

GCGCGGATTGCTGATGCGAAGAGATCAATCTTCCATCTTCTCTTTGCTCAAGCAGTGTTTGATTCTGCAAGCTTCAATGGCCCGAGGTGCAATGGCGGCT[G/A]
CTCACATGAAACCATCGTCGGCATTGTCCAAGCAGTGTTCAAGCACCATGCGTACTCTAAGCTGCACAAGGGACACCTTGGGATGTTAGTTTAAGCACAA

Reverse complement sequence

TTGTGCTTAAACTAACATCCCAAGGTGTCCCTTGTGCAGCTTAGAGTACGCATGGTGCTTGAACACTGCTTGGACAATGCCGACGATGGTTTCATGTGAG[C/T]
AGCCGCCATTGCACCTCGGGCCATTGAAGCTTGCAGAATCAAACACTGCTTGAGCAAAGAGAAGATGGAAGATTGATCTCTTCGCATCAGCAATCCGCGC

Allele Frequencies:

Allele Effect: