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Detailed information for vg1125246164:

Variant ID: vg1125246164 (JBrowse)	Variation Type: SNP
Chromosome: chr11	Position: 25246164
Reference Allele: T	Alternative Allele: C
Primary Allele: T	Secondary Allele: C

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 0.99, others allele: 0.00, population size: 359. )

Flanking Sequence (100 bp) in Reference Genome:

AGCTCAGGTTTTCTGACGTGGCATGGTTACAACAAGGTTTCTTGCTTGTTTCTGCAAGAGAAACCAGTCATGGTCCTCATGGAGTTCACCAAATTTACAA[T/C]
GACAGGCTTGGAGGCGACGAGAAGATGTCGGTGAAGGCTTTTTTTTACTGGATGATCATTGTTCACAGTTCATGGCGCGGATTGCTGATGCGAAGAGATC

Reverse complement sequence

GATCTCTTCGCATCAGCAATCCGCGCCATGAACTGTGAACAATGATCATCCAGTAAAAAAAAGCCTTCACCGACATCTTCTCGTCGCCTCCAAGCCTGTC[A/G]
TTGTAAATTTGGTGAACTCCATGAGGACCATGACTGGTTTCTCTTGCAGAAACAAGCAAGAAACCTTGTTGTAACCATGCCACGTCAGAAAACCTGAGCT

Allele Frequencies:

Allele Effect: