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Detailed information for vg1125246022:

Variant ID: vg1125246022 (JBrowse)	Variation Type: SNP
Chromosome: chr11	Position: 25246022
Reference Allele: C	Alternative Allele: T
Primary Allele: C	Secondary Allele: T

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 0.99, others allele: 0.00, population size: 359. )

Flanking Sequence (100 bp) in Reference Genome:

TTACAGCAGCAGTAGCATATCTCCCTCAATTATACACTCACCACTCATCGTCACAGCACAAGCACTAGGTTTTTGGTCATGCTAAGGAATGAAATTTCTC[C/T]
AGAGCTAGCACCTAAAACCTTTTTCCGTTTCGGAGGAAATCAGCTCAGGTTTTCTGACGTGGCATGGTTACAACAAGGTTTCTTGCTTGTTTCTGCAAGA

Reverse complement sequence

TCTTGCAGAAACAAGCAAGAAACCTTGTTGTAACCATGCCACGTCAGAAAACCTGAGCTGATTTCCTCCGAAACGGAAAAAGGTTTTAGGTGCTAGCTCT[G/A]
GAGAAATTTCATTCCTTAGCATGACCAAAAACCTAGTGCTTGTGCTGTGACGATGAGTGGTGAGTGTATAATTGAGGGAGATATGCTACTGCTGCTGTAA

Allele Frequencies:

Allele Effect: