Search for Variation information by Variation ID:
Detailed information for vg1105974413:
| Variant ID: vg1105974413 (JBrowse) | Variation Type: SNP |
| Chromosome: chr11 | Position: 5974413 |
| Reference Allele: G | Alternative Allele: A |
| Primary Allele: G | Secondary Allele: A |
Inferred Ancestral Allele: Not determined.
Flanking Sequence (100 bp) in Reference Genome:
CCTGCACATGGTGCTGGAGGCCGGCGAGCACCGCGGCAGCTCGGTGACGGCGAAGGGCCGCATCGACATGGACGCCGGGGAGCGCGAGTCGGTGGTGATC[G/A]
GCGGCACGGGGCGGTTTCGGCTCGCGCGCGGGTACATGGTCACCAAGAACTACGACTACAGCCTCGCCACCGGCGGCGTCGTCCAGATCGACGTCTGCCT
Reverse complement sequence
AGGCAGACGTCGATCTGGACGACGCCGCCGGTGGCGAGGCTGTAGTCGTAGTTCTTGGTGACCATGTACCCGCGCGCGAGCCGAAACCGCCCCGTGCCGC[C/T]
GATCACCACCGACTCGCGCTCCCCGGCGTCCATGTCGATGCGGCCCTTCGCCGTCACCGAGCTGCCGCGGTGCTCGCCGGCCTCCAGCACCATGTGCAGG
Allele Frequencies:
Allele Effect:
| Var ID | Var | Locus | snpEff Annotation | CooVar Annotation | Chromatin Accessibility Score | PolyPhen-2 Effect | PolyPhen-2 Score | SIFT Effect | SIFT Score |
|---|---|---|---|---|---|---|---|---|---|
| vg1105974413 | G -> A | LOC_Os11g10840.1 | missense_variant ; p.Gly32Ser; MODERATE | nonsynonymous_codon ; G32S | Average:29.814; most accessible tissue: Minghui63 root, score: 40.262 | possibly damaging  |
1.834 |
DELETERIOUS | 0.00 |
| vg1105974413 | G -> DEL | LOC_Os11g10840.1 | N | frameshift_variant | Average:29.814; most accessible tissue: Minghui63 root, score: 40.262 | N | N | N | N |
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