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Detailed information for vg0912484774:

Variant ID: vg0912484774 (JBrowse)Variation Type: SNP
Chromosome: chr09Position: 12484774
Reference Allele: TAlternative Allele: C
Primary Allele: TSecondary Allele: C

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 1.00, others allele: 0.00, population size: 85. )

Flanking Sequence (100 bp) in Reference Genome:


CGCCGGCCGCGAAGAATGGTAGCGCGGCGGTGGTGGCGGAGGCGCTCGCCGGATTCAGCTTCGTGACGGTGAGCGAGGTGGCGGAGCGGAACAGCACGCT[T/C]
TGGGTCGGTTCCGTTGACACGCCGTACGCCGGCGCTGCGGTGAGGGGTCACCGGTGACCGTGTTCCGTCGGGCGGTTGGTCGACATACGTGGTGGTGCAG

Reverse complement sequence

CTGCACCACCACGTATGTCGACCAACCGCCCGACGGAACACGGTCACCGGTGACCCCTCACCGCAGCGCCGGCGTACGGCGTGTCAACGGAACCGACCCA[A/G]
AGCGTGCTGTTCCGCTCCGCCACCTCGCTCACCGTCACGAAGCTGAATCCGGCGAGCGCCTCCGCCACCACCGCCGCGCTACCATTCTTCGCGGCCGGCG

Allele Frequencies:

Allele Effect: