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Detailed information for vg0804594153:

Variant ID: vg0804594153 (JBrowse)	Variation Type: SNP
Chromosome: chr08	Position: 4594153
Reference Allele: G	Alternative Allele: C
Primary Allele: G	Secondary Allele: C

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 1.00, others allele: 0.00, population size: 281. )

Flanking Sequence (100 bp) in Reference Genome:

TAAGATTGTCATTTAGATTGATACTATCCTGCTTCTTTTGCTGCTTGATTTCGTAGGTAGTTTTGAACTTTTGATTACTTGGGAATCTGAAGCTGGCTTT[G/C]
CAAGCATCAAGATGCTGATTAAGTGATTCGTGTCTGTAAATGTTCCACGATGATGATGATGATGATGATAAATTGAGTCGCAAATTGAAAGGAAACAAAA

Reverse complement sequence

TTTTGTTTCCTTTCAATTTGCGACTCAATTTATCATCATCATCATCATCATCGTGGAACATTTACAGACACGAATCACTTAATCAGCATCTTGATGCTTG[C/G]
AAAGCCAGCTTCAGATTCCCAAGTAATCAAAAGTTCAAAACTACCTACGAAATCAAGCAGCAAAAGAAGCAGGATAGTATCAATCTAAATGACAATCTTA

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: