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Detailed information for vg0728866617:

Variant ID: vg0728866617 (JBrowse)	Variation Type: SNP
Chromosome: chr07	Position: 28866617
Reference Allele: T	Alternative Allele: A
Primary Allele: T	Secondary Allele: A

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 0.98, A: 0.01, others allele: 0.00, population size: 304. )

Flanking Sequence (100 bp) in Reference Genome:

AAAAGAAGTAAATTGCATCAATATGTAATAATTACAGATTTCCCATTCCAAACATGTGTAGCTTGCATCTTTCAGTGGTAAGATTTACATGAGGCCCGGT[T/A]
TTACTATCTCTCTAGGGGGAACCAGAAACCAGGCATTTAGATTAGAGTACTAAGCAAGTCATGGTTCTCAATGACTCTGTGCCAATGTCAAGAACATGAA

Reverse complement sequence

TTCATGTTCTTGACATTGGCACAGAGTCATTGAGAACCATGACTTGCTTAGTACTCTAATCTAAATGCCTGGTTTCTGGTTCCCCCTAGAGAGATAGTAA[A/T]
ACCGGGCCTCATGTAAATCTTACCACTGAAAGATGCAAGCTACACATGTTTGGAATGGGAAATCTGTAATTATTACATATTGATGCAATTTACTTCTTTT

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: