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Detailed information for vg0728866141:

Variant ID: vg0728866141 (JBrowse)	Variation Type: SNP
Chromosome: chr07	Position: 28866141
Reference Allele: G	Alternative Allele: A
Primary Allele: G	Secondary Allele: A

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 1.00, others allele: 0.00, population size: 354. )

Flanking Sequence (100 bp) in Reference Genome:

TGCAGAGGCAAAGTCTAGAAGGGCTTGCTTTTCAGAGGTTAAGTCTGCTACAGACAAGGGATTGAACAACAAAAGTGACAACTGCAGTGAGAGCAGAAGA[G/A]
ACAAAGGATTTCTAATACTGAGATGATCCATTTGATGAATCTCCAAATCAGGGAACTAGACGAGCAGCATCTTCGTTTGTTTATGTCAGATAAGTAGCCG

Reverse complement sequence

CGGCTACTTATCTGACATAAACAAACGAAGATGCTGCTCGTCTAGTTCCCTGATTTGGAGATTCATCAAATGGATCATCTCAGTATTAGAAATCCTTTGT[C/T]
TCTTCTGCTCTCACTGCAGTTGTCACTTTTGTTGTTCAATCCCTTGTCTGTAGCAGACTTAACCTCTGAAAAGCAAGCCCTTCTAGACTTTGCCTCTGCA

Allele Frequencies:

Allele Effect: