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Detailed information for vg0724293857:

Variant ID: vg0724293857 (JBrowse)	Variation Type: SNP
Chromosome: chr07	Position: 24293857
Reference Allele: C	Alternative Allele: A
Primary Allele: C	Secondary Allele: A

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 0.99, others allele: 0.00, population size: 291. )

Flanking Sequence (100 bp) in Reference Genome:

AAGGCTAGTAAAATGGCTAAGTAGAATTGCTTTCCAGCATACTCTAAATTGCAACACATAAAAATTCATAATATGAATTTGCATTTGAGTAAACAGACTC[C/A]
TGTAGCCGACATTCCAAAAAATGCCAAATTCAAGAGAATCGGAAAAAAAAAAGGAAAGAAGAGGAAGGGAATAAAGTAGATTTTCTAAGGTACGCCAAAA

Reverse complement sequence

TTTTGGCGTACCTTAGAAAATCTACTTTATTCCCTTCCTCTTCTTTCCTTTTTTTTTTCCGATTCTCTTGAATTTGGCATTTTTTGGAATGTCGGCTACA[G/T]
GAGTCTGTTTACTCAAATGCAAATTCATATTATGAATTTTTATGTGTTGCAATTTAGAGTATGCTGGAAAGCAATTCTACTTAGCCATTTTACTAGCCTT

Allele Frequencies:

Allele Effect: