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Detailed information for vg0724293447:

Variant ID: vg0724293447 (JBrowse)	Variation Type: SNP
Chromosome: chr07	Position: 24293447
Reference Allele: T	Alternative Allele: A
Primary Allele: T	Secondary Allele: A

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 1.00, A: 0.01, others allele: 0.00, population size: 263. )

Flanking Sequence (100 bp) in Reference Genome:

TATTATTTTTTTCCTGTTATCATAATAAGCAATCATCAAATGCAATTCATACATTTTTTCAGAGCAACAAATAGAACCAACAACGGGAAATGTCTTCACT[T/A]
TGTCATCCTAGAACTAGAATGGTTCCAAAACGGTTGATAGGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTAATGTT

Reverse complement sequence

AACATTAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTACCTATCAACCGTTTTGGAACCATTCTAGTTCTAGGATGACA[A/T]
AGTGAAGACATTTCCCGTTGTTGGTTCTATTTGTTGCTCTGAAAAAATGTATGAATTGCATTTGATGATTGCTTATTATGATAACAGGAAAAAAATAATA

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: