Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Detailed information for vg0430890375:

Variant ID: vg0430890375 (JBrowse)	Variation Type: SNP
Chromosome: chr04	Position: 30890375
Reference Allele: C	Alternative Allele: T
Primary Allele: C	Secondary Allele: T

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 0.76, C: 0.24, others allele: 0.00, population size: 200. )

Flanking Sequence (100 bp) in Reference Genome:

GTCAGCGCCATATACCTTGCTAAGTACTCCAATGATAATTATTATCTTCAAATCTTGCTTAACTTCCAATGATTACAATATGCCCCTTTATATAAAGTTC[C/T]
CCCCTAACAAATACAGATCAAATTTATCTAAGAATAACTTTCCCTACCTTATAACTACTCCATTCATTTCATATTATAAGATGTTTTAGGTTTGGACTAA

Reverse complement sequence

TTAGTCCAAACCTAAAACATCTTATAATATGAAATGAATGGAGTAGTTATAAGGTAGGGAAAGTTATTCTTAGATAAATTTGATCTGTATTTGTTAGGGG[G/A]
GAACTTTATATAAAGGGGCATATTGTAATCATTGGAAGTTAAGCAAGATTTGAAGATAATAATTATCATTGGAGTACTTAGCAAGGTATATGGCGCTGAC

Allele Frequencies:

Allele Effect: