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Detailed information for vg0430889681:

Variant ID: vg0430889681 (JBrowse)	Variation Type: SNP
Chromosome: chr04	Position: 30889681
Reference Allele: C	Alternative Allele: T
Primary Allele: C	Secondary Allele: T

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 1.01, others allele: 0.00, population size: 340. )

Flanking Sequence (100 bp) in Reference Genome:

TTTTTTTAAGGTACTTTCAAGGGGATCCCTTTACCTTACCCTAAAGACTAAAGAGTAGAGACTCCAGAGCTTTGAGAAGTTTGTGTCTACATGGAAAAAG[C/T]
GGATGACACAAGAGCCAATACAAGAGACGCAATGCCAAGATCGGAAGATCTAAAATCATATCAACCCATTGAATATATCGGAACCCACCATTCAATTAAG

Reverse complement sequence

CTTAATTGAATGGTGGGTTCCGATATATTCAATGGGTTGATATGATTTTAGATCTTCCGATCTTGGCATTGCGTCTCTTGTATTGGCTCTTGTGTCATCC[G/A]
CTTTTTCCATGTAGACACAAACTTCTCAAAGCTCTGGAGTCTCTACTCTTTAGTCTTTAGGGTAAGGTAAAGGGATCCCCTTGAAAGTACCTTAAAAAAA

Allele Frequencies:

Allele Effect: