Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Detailed information for vg0430889580:

Variant ID: vg0430889580 (JBrowse)Variation Type: INDEL
Chromosome: chr04Position: 30889580
Reference Allele: AAlternative Allele: ATT
Primary Allele: ASecondary Allele: ATT

Inferred Ancestral Allele : A (evidence from allele frequency in Oryza rufipogon: A: 1.00, others allele: 0.00, population size: 291. )

Flanking Sequence (100 bp) in Reference Genome:


ATGCCCTGAGAAGCTCTGTGCTACTGCCCCTGCCATCCAGCTACACTCAAGACCATTTTACTGCCTGTCCTTTAACTTCTTAGCTTTGTTCATCAAATAG[A/ATT]
TTTTTTTAAGGTACTTTCAAGGGGATCCCTTTACCTTACCCTAAAGACTAAAGAGTAGAGACTCCAGAGCTTTGAGAAGTTTGTGTCTACATGGAAAAAG

Reverse complement sequence

CTTTTTCCATGTAGACACAAACTTCTCAAAGCTCTGGAGTCTCTACTCTTTAGTCTTTAGGGTAAGGTAAAGGGATCCCCTTGAAAGTACCTTAAAAAAA[T/AAT]
CTATTTGATGAACAAAGCTAAGAAGTTAAAGGACAGGCAGTAAAATGGTCTTGAGTGTAGCTGGATGGCAGGGGCAGTAGCACAGAGCTTCTCAGGGCAT

Allele Frequencies: