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Detailed information for vg0430889320:

Variant ID: vg0430889320 (JBrowse)Variation Type: INDEL
Chromosome: chr04Position: 30889320
Reference Allele: GATTCTTTTAGGGAAATATGTCCAGAAlternative Allele: G
Primary Allele: GATTCTTTTAGGGAAATATG TCCAGASecondary Allele: G

Inferred Ancestral Allele : GATTCTTTTAGGGAAATATGTCCAGA (evidence from allele frequency in Oryza rufipogon: GATTCTTTTAGGGAAATATGTCCAGA: 1.01, others allele: 0.00, population size: 318. )

Flanking Sequence (100 bp) in Reference Genome:


TGTAACTTTGTTTTATTGTGAGATACTGGACTTCTACTTTTAGCTTTAGACAAAATCATCTAGCTCTTGCTTGATGGGTAGAAAGGTCAGAGCCTCAGAG[GATTCTTTTAGGGAAATATGTCCAGA/G]
TCATCATTATTACTATGGTGTATGTTCTGTGTTGATGAAGGAATCATTCCCTATTAAGTATTGGAGATTCAAGTTAACACCAAACTTTATCCCCTTATTT

Reverse complement sequence

AAATAAGGGGATAAAGTTTGGTGTTAACTTGAATCTCCAATACTTAATAGGGAATGATTCCTTCATCAACACAGAACATACACCATAGTAATAATGATGA[TCTGGACATATTTCCCTAAAAGAATC/C]
CTCTGAGGCTCTGACCTTTCTACCCATCAAGCAAGAGCTAGATGATTTTGTCTAAAGCTAAAAGTAGAAGTCCAGTATCTCACAATAAAACAAAGTTACA

Allele Frequencies:

Allele Effect: