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Detailed information for vg0227603681:

Variant ID: vg0227603681 (JBrowse)	Variation Type: SNP
Chromosome: chr02	Position: 27603681
Reference Allele: G	Alternative Allele: T
Primary Allele: G	Secondary Allele: T

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 1.01, others allele: 0.00, population size: 259. )

Flanking Sequence (100 bp) in Reference Genome:

TAAGCTTCAAATGTGGAAAAAATGCTTGCTCCAAATGCGTCTGAAAAATCCTAGTAACAATGAGGTGATAAAATGGAGAAGGAAATTATGTGTCTGAATT[G/T]
AGCAAGGAGTGATAACTTGGGAACCAAAAGTACTACTAATCCTACTAATAAAAACTATTAACTTGAGTAAACATCGTAATAAAAAAGATTTTGTAGTTAT

Reverse complement sequence

ATAACTACAAAATCTTTTTTATTACGATGTTTACTCAAGTTAATAGTTTTTATTAGTAGGATTAGTAGTACTTTTGGTTCCCAAGTTATCACTCCTTGCT[C/A]
AATTCAGACACATAATTTCCTTCTCCATTTTATCACCTCATTGTTACTAGGATTTTTCAGACGCATTTGGAGCAAGCATTTTTTCCACATTTGAAGCTTA

Allele Frequencies:

Allele Effect: