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Detailed information for vg0227603478:

Variant ID: vg0227603478 (JBrowse)	Variation Type: SNP
Chromosome: chr02	Position: 27603478
Reference Allele: A	Alternative Allele: T
Primary Allele: T	Secondary Allele: A

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 1.00, others allele: 0.00, population size: 222. )

Flanking Sequence (100 bp) in Reference Genome:

CCTGGATATACCTGGATACAAATTAGACAACAATTCAATGCTTCAAACTTGTTTAGTTGTGCATGACGTGCAAATTCTGTTATATAGCAATTGAGCAATA[A/T]
ATGCACATCACACTTTAACTCAGGATTGATGCATACTATTTGCAATGCAAGCTATTCTTTCTAACAGAAAGATAGATGGGCATTGCCTTTTTAAAACCTA

Reverse complement sequence

TAGGTTTTAAAAAGGCAATGCCCATCTATCTTTCTGTTAGAAAGAATAGCTTGCATTGCAAATAGTATGCATCAATCCTGAGTTAAAGTGTGATGTGCAT[T/A]
TATTGCTCAATTGCTATATAACAGAATTTGCACGTCATGCACAACTAAACAAGTTTGAAGCATTGAATTGTTGTCTAATTTGTATCCAGGTATATCCAGG

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: