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Detailed information for vg0227603336:

Variant ID: vg0227603336 (JBrowse)	Variation Type: INDEL
Chromosome: chr02	Position: 27603336
Reference Allele: G	Alternative Allele: GA,A
Primary Allele: GA	Secondary Allele: G

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 1.00, others allele: 0.00, population size: 82. )

Flanking Sequence (100 bp) in Reference Genome:

AAATTTCGTTCTGAAATTTTGAAGACATTTTAGTCAAAGTTGAATAAAATAATTCCAAATTCACAAAAAAAAATTCGGCCAAAATAATATCATTGGGGGG[G/GA,A]
GGGGTCCGATATGATCGAAATTTCGTTCCGGAATTTTGAACCCTGGATATACCTGGATACAAATTAGACAACAATTCAATGCTTCAAACTTGTTTAGTTG

Reverse complement sequence

CAACTAAACAAGTTTGAAGCATTGAATTGTTGTCTAATTTGTATCCAGGTATATCCAGGGTTCAAAATTCCGGAACGAAATTTCGATCATATCGGACCCC[C/TC,T]
CCCCCCAATGATATTATTTTGGCCGAATTTTTTTTTGTGAATTTGGAATTATTTTATTCAACTTTGACTAAAATGTCTTCAAAATTTCAGAACGAAATTT

Allele Frequencies:

Allele Effect: