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Detailed information for vg0227603067:

Variant ID: vg0227603067 (JBrowse)	Variation Type: SNP
Chromosome: chr02	Position: 27603067
Reference Allele: C	Alternative Allele: A
Primary Allele: C	Secondary Allele: A

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 1.00, others allele: 0.00, population size: 124. )

Flanking Sequence (100 bp) in Reference Genome:

CAATTTCTACGGGTATGGCAACCAGTTCACGGAAATGACAAATCGCCACGCCTCACACTGATTTAATTTGTTCCAGCAGTGGAAAATCTAAAAAAAAAAA[C/A]
GAATGGTTCCTCCATTTACTTCCAATTATCTGGATACAAATTAGACAACAATTCAAGGCTTCAAGCTTGTTTATGAATGGCTCCTTCATTTGATTTCAGT

Reverse complement sequence

ACTGAAATCAAATGAAGGAGCCATTCATAAACAAGCTTGAAGCCTTGAATTGTTGTCTAATTTGTATCCAGATAATTGGAAGTAAATGGAGGAACCATTC[G/T]
TTTTTTTTTTTAGATTTTCCACTGCTGGAACAAATTAAATCAGTGTGAGGCGTGGCGATTTGTCATTTCCGTGAACTGGTTGCCATACCCGTAGAAATTG

Allele Frequencies:

Allele Effect: