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Detailed information for vg0204059211:

Variant ID: vg0204059211 (JBrowse)	Variation Type: SNP
Chromosome: chr02	Position: 4059211
Reference Allele: T	Alternative Allele: G
Primary Allele: T	Secondary Allele: G

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 0.99, T: 0.02, others allele: 0.00, population size: 259. )

Flanking Sequence (100 bp) in Reference Genome:

TGTATGTATGCATGGCAGCATGGGAATGAAGGGCAGAAAAGTGGATAGGTAAACTTCCCTGGTGCTTTATTTGAAAGGAGAAACTTGATGAAACTTCATG[T/G]
GAATTTGTTGGTGCAATTTAATTTGAATGCATATGCATGTGGATGCAACGCTTTTATTTTGTTAATTACCTCTAGTTGCTCATGTAGCCTTCTTTGCACC

Reverse complement sequence

GGTGCAAAGAAGGCTACATGAGCAACTAGAGGTAATTAACAAAATAAAAGCGTTGCATCCACATGCATATGCATTCAAATTAAATTGCACCAACAAATTC[A/C]
CATGAAGTTTCATCAAGTTTCTCCTTTCAAATAAAGCACCAGGGAAGTTTACCTATCCACTTTTCTGCCCTTCATTCCCATGCTGCCATGCATACATACA

Allele Frequencies:

Allele Effect: