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Detailed information for vg0134870545:

Variant ID: vg0134870545 (JBrowse)	Variation Type: SNP
Chromosome: chr01	Position: 34870545
Reference Allele: C	Alternative Allele: T
Primary Allele: C	Secondary Allele: T

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 0.99, others allele: 0.00, population size: 286. )

Flanking Sequence (100 bp) in Reference Genome:

GATATATTGATATGTCTTTAGATGCTGTAGTTTGAACTGTCTACTACAAGCCTAAAAAATTACTTGCTACAGCACTGCAACATTTTAGATTTTCTTTCAC[C/T]
TATAAAAAATCCCAATCTAATTTATTCAAATGAGGTCATGGAAAGAAGAAACACAGCTCAGTTACTACTTCCAATATTGCAAAGTATTAGAAACTACTAA

Reverse complement sequence

TTAGTAGTTTCTAATACTTTGCAATATTGGAAGTAGTAACTGAGCTGTGTTTCTTCTTTCCATGACCTCATTTGAATAAATTAGATTGGGATTTTTTATA[G/A]
GTGAAAGAAAATCTAAAATGTTGCAGTGCTGTAGCAAGTAATTTTTTAGGCTTGTAGTAGACAGTTCAAACTACAGCATCTAAAGACATATCAATATATC

Allele Frequencies:

Allele Effect: