Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


TGTACGTGATGTGGGTGAAGAGCCGGCAGGCCAGCAACAAGAAGAAGAAGAAGAAGCAGGGCGGCAGCCGCAGCTGGTTCAAGCTGCCGATGCTGTCGTC[GCAGCAGGCGT/GCAACAGGCGT]
CGTATGCGAGTGAGGAGCAGCAGGGCGAAGAAGACGACGGCGACGGCGACGAGGTTCTCATCCCCGGGTTGCCGGCGAGGTTCACGTACGCGGAGCTGGA

Reverse complement sequence

TCCAGCTCCGCGTACGTGAACCTCGCCGGCAACCCGGGGATGAGAACCTCGTCGCCGTCGCCGTCGTCTTCTTCGCCCTGCTGCTCCTCACTCGCATACG[ACGCCTGCTGC/ACGCCTGTTGC]
GACGACAGCATCGGCAGCTTGAACCAGCTGCGGCTGCCGCCCTGCTTCTTCTTCTTCTTCTTGTTGCTGGCCTGCCGGCTCTTCACCCACATCACGTACA

Allele Frequencies:

Populations Population SizeFrequency of GCAGCAGGCGT(primary allele) Frequency of GCAACAGGCGT(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 98.80% 0.40% 0.78% 0.00% NA
All Indica  492 99.60% 0.00% 0.41% 0.00% NA
All Japonica  244 98.80% 0.00% 1.23% 0.00% NA
Aus  7 85.70% 0.00% 14.29% 0.00% NA
Indica I  492 99.60% 0.00% 0.41% 0.00% NA
Indica II  215 100.00% 0.00% 0.00% 0.00% NA
Indica III  21 100.00% 0.00% 0.00% 0.00% NA
Indica Intermediate  190 99.50% 0.00% 0.53% 0.00% NA
Temperate Japonica  189 98.40% 0.00% 1.59% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 77.80% 22.20% 0.00% 0.00% NA
Intermediate  231 99.10% 0.40% 0.43% 0.00% NA