AACATTCTTGGCTTCAATATCGTTTAAGAGTAATTCACAACATCACAATCTCAGAAGAACATTCTAAGGACACACTGCAAACTTGTGCTTACTTGGATTA[GTCTTGGTCTTGCC/GTCTTGGTTTTGCT]
ATTCAATTTCTTTGAAGTAGAGGCCTTGTGAGGAGATCCAACTAGAAATGTTGATGGTGTGCTAGTATCTTCAGAATCACTTAAATGGTATTGCTCAGCA
TGCTGAGCAATACCATTTAAGTGATTCTGAAGATACTAGCACACCATCAACATTTCTAGTTGGATCTCCTCACAAGGCCTCTACTTCAAAGAAATTGAAT[GGCAAGACCAAGAC/AGCAAAACCAAGAC]
TAATCCAAGTAAGCACAAGTTTGCAGTGTGTCCTTAGAATGTTCTTCTGAGATTGTGATGTTGTGAATTACTCTTAAACGATATTGAAGCCAAGAATGTT
| Populations | Population Size | Frequency of GTCTTGGTTTTGCT(primary allele) | Frequency of GTCTTGGTCTTGCC(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 66.10% | 29.10% | 6.72% | 0.00% | NA |
| All Indica | 492 | 91.70% | 3.60% | 4.88% | 0.00% | NA |
| All Japonica | 244 | 21.70% | 70.90% | 9.43% | 0.00% | NA |
| Aus | 7 | 0.00% | 85.70% | 14.29% | 0.00% | NA |
| Indica I | 492 | 91.70% | 3.60% | 4.88% | 0.00% | NA |
| Indica II | 215 | 98.10% | 0.50% | 1.40% | 0.00% | NA |
| Indica III | 21 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 92.10% | 1.10% | 6.84% | 0.00% | NA |
| Temperate Japonica | 189 | 8.10% | 84.10% | 8.47% | 0.00% | NA |
| Tropical Japonica | 36 | 80.60% | 6.50% | 13.89% | 0.00% | NA |
| Japonica Intermediate | 19 | 29.40% | 63.20% | 10.53% | 0.00% | NA |
| VI/Aromatic | 9 | 25.00% | 66.70% | 11.11% | 0.00% | NA |
| Intermediate | 231 | 82.70% | 10.30% | 7.79% | 0.00% | NA |