AGCACGTAGCTCTGGCTGCTGGTCCAGTAGGAGTAGCGGAACCGCCATGGCTTGCCGGACTCGTCCTCGAAGGAGAGGAGGAGGCCCTTCTCACCGGAGT[CGCCGCCGCCGA/CGCCGCTGCCGA]
GCGGGAAGTACCTCTCGGCGTGCTGCTTGGGGATCACCAGCCTGTTGAGCTTGCCGACGTCGCTCGGCGTCAGCGGCTTCTCGAACAGGTGCTCCCTCTC
GAGAGGGAGCACCTGTTCGAGAAGCCGCTGACGCCGAGCGACGTCGGCAAGCTCAACAGGCTGGTGATCCCCAAGCAGCACGCCGAGAGGTACTTCCCGC[TCGGCGGCGGCG/TCGGCAGCGGCG]
ACTCCGGTGAGAAGGGCCTCCTCCTCTCCTTCGAGGACGAGTCCGGCAAGCCATGGCGGTTCCGCTACTCCTACTGGACCAGCAGCCAGAGCTACGTGCT
| Populations | Population Size | Frequency of CGCCGCCGCCGA(primary allele) | Frequency of CGCCGCTGCCGA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 93.20% | 3.20% | 3.75% | 0.00% | NA |
| All Indica | 492 | 91.30% | 4.70% | 4.27% | 0.00% | NA |
| All Japonica | 244 | 98.00% | 0.00% | 2.05% | 0.00% | NA |
| Aus | 7 | 42.90% | 40.00% | 28.57% | 0.00% | NA |
| Indica I | 492 | 91.30% | 4.70% | 4.27% | 0.00% | NA |
| Indica II | 215 | 93.50% | 3.40% | 3.26% | 0.00% | NA |
| Indica III | 21 | 85.70% | 5.30% | 9.52% | 0.00% | NA |
| Indica Intermediate | 190 | 88.90% | 7.10% | 4.21% | 0.00% | NA |
| Temperate Japonica | 189 | 97.40% | 0.00% | 2.65% | 0.00% | NA |
| Tropical Japonica | 36 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 90.50% | 5.90% | 3.90% | 0.00% | NA |