CGTGTCGTTCGTTTGCTGTTCATCGTCTCACTGATTTCTTTTGTTCTCTTTGTACGTAGTACGAGTTTCACAGAAGAAATGAACAGAACGGTCAGTTAGG[TTGTTTGTTTG/TTGTTTGTTTGT]
CAAGATCGGTAACTTTTTTTTTTGAGAGAGAATCCATTAATGCCACTGAGACTTTGTCACACGTCTATGGTTTACCACTGACTTTGTCTTAGGGGTATTT
AAATACCCCTAAGACAAAGTCAGTGGTAAACCATAGACGTGTGACAAAGTCTCAGTGGCATTAATGGATTCTCTCTCAAAAAAAAAAGTTACCGATCTTG[CAAACAAACAA/ACAAACAAACAA]
CCTAACTGACCGTTCTGTTCATTTCTTCTGTGAAACTCGTACTACGTACAAAGAGAACAAAAGAAATCAGTGAGACGATGAACAGCAAACGAACGACACG
| Populations | Population Size | Frequency of TTGTTTGTTTGT(primary allele) | Frequency of TTGTTTGTTTG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 62.00% | 34.80% | 4.91% | 0.00% | NA |
| All Indica | 492 | 91.10% | 4.10% | 5.08% | 0.00% | NA |
| All Japonica | 244 | 10.70% | 85.70% | 4.10% | 0.00% | NA |
| Aus | 7 | 16.70% | 71.40% | 14.29% | 0.00% | NA |
| Indica I | 492 | 91.10% | 4.10% | 5.08% | 0.00% | NA |
| Indica II | 215 | 92.10% | 3.40% | 4.65% | 0.00% | NA |
| Indica III | 21 | 85.70% | 5.30% | 9.52% | 0.00% | NA |
| Indica Intermediate | 190 | 87.90% | 6.20% | 6.32% | 0.00% | NA |
| Temperate Japonica | 189 | 13.70% | 83.10% | 3.70% | 0.00% | NA |
| Tropical Japonica | 36 | 0.00% | 94.40% | 5.56% | 0.00% | NA |
| Japonica Intermediate | 19 | 0.00% | 94.70% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 0.00% | 100.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 74.90% | 19.90% | 6.49% | 0.00% | NA |