RiceVarMap2

Search for Variation information by Variation ID:

Flanking Sequence (100 bp) in Reference Genome:

AGACCTAAAATAATGACGTTTCACAATCATAATATAGCTAATGTAGTGTCCCTTAAGTGGAAAGGTTGCTCAAATAAAATGAGTCCATGGTAGGTATGAA[C/T]
GACCAAAAGAGTTTCTCCTAAGTTAACATCTTACTTTTTAAGTCACTAATACAGTTGATTACTTAGTGATATGTAGGTTTACAATCTAACACGAAAACAG

Reverse complement sequence

CTGTTTTCGTGTTAGATTGTAAACCTACATATCACTAAGTAATCAACTGTATTAGTGACTTAAAAAGTAAGATGTTAACTTAGGAGAAACTCTTTTGGTC[G/A]
TTCATACCTACCATGGACTCATTTTATTTGAGCAACCTTTCCACTTAAGGGACACTACATTAGCTATATTATGATTGTGAAACGTCATTATTTTAGGTCT

Allele Frequencies:

Search:

Populations	Population Size	Frequency of C(primary allele)	Frequency of T(secondary allele)	Frequency of N	Frequency of DEL	Frequency of others Allele
All	774	82.20%	15.20%	3.10%	0.00%	NA
All Indica	492	79.90%	17.10%	3.66%	0.00%	NA
All Japonica	244	89.80%	8.70%	1.64%	0.00%	NA
Aus	7	85.70%	14.30%	0.00%	0.00%	NA
Indica I	492	79.90%	17.10%	3.66%	0.00%	NA
Indica II	215	74.90%	23.00%	2.79%	0.00%	NA
Indica III	21	85.70%	14.30%	0.00%	0.00%	NA
Indica Intermediate	190	86.80%	9.80%	3.68%	0.00%	NA
Temperate Japonica	189	95.80%	2.70%	1.59%	0.00%	NA
Tropical Japonica	36	58.30%	40.00%	2.78%	0.00%	NA
Japonica Intermediate	19	89.50%	10.50%	0.00%	0.00%	NA
VI/Aromatic	9	25.00%	66.70%	11.11%	0.00%	NA
Intermediate	231	85.70%	11.20%	3.46%	0.00%	NA

Showing 1 to 13 of 13 entries

Contact

Address: Room B111, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural university, Wuhan, 430070, China

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Search for Variation information by Variation ID:

Flanking Sequence (100 bp) in Reference Genome:

Reverse complement sequence

Allele Frequencies:

RiceVarMap v2.0

Tools

Blast

Design Primer by Variation ID

Design Primer by Region

Haplotype Network Analysis

Varitation Coordinate Convert

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