RiceVarMap2

Search for Variation information by Variation ID:

Flanking Sequence (100 bp) in Reference Genome:

AAAAGGAACATAATATTCCTAAGAGCCCACACAGCTTTTAATCTCAATGTTGGATCCATAGACTTGGACAAATGAACAAGCTGGGAGACAGCCCCAGATT[GA/GG]
AGAAGAATCGATTTCCTGGGTGTTAAATTCACAGCAATATTGCAAATAGCACCAAGGGCAGCAACCTGTAATACCATTTTGTGAACACAGACATTTAGTA

Reverse complement sequence

TACTAAATGTCTGTGTTCACAAAATGGTATTACAGGTTGCTGCCCTTGGTGCTATTTGCAATATTGCTGTGAATTTAACACCCAGGAAATCGATTCTTCT[TC/CC]
AATCTGGGGCTGTCTCCCAGCTTGTTCATTTGTCCAAGTCTATGGATCCAACATTGAGATTAAAAGCTGTGTGGGCTCTTAGGAATATTATGTTCCTTTT

Allele Frequencies:

Search:

Populations	Population Size	Frequency of GA(primary allele)	Frequency of GG(secondary allele)	Frequency of N	Frequency of DEL	Frequency of others Allele
All	774	90.80%	7.40%	1.94%	0.00%	NA
All Indica	492	87.00%	11.40%	1.83%	0.00%	NA
All Japonica	244	98.00%	0.40%	1.64%	0.00%	NA
Aus	7	100.00%	0.00%	0.00%	0.00%	NA
Indica I	492	87.00%	11.40%	1.83%	0.00%	NA
Indica II	215	83.30%	14.40%	2.79%	0.00%	NA
Indica III	21	100.00%	0.00%	0.00%	0.00%	NA
Indica Intermediate	190	85.80%	13.30%	1.05%	0.00%	NA
Temperate Japonica	189	97.40%	0.50%	2.12%	0.00%	NA
Tropical Japonica	36	100.00%	0.00%	0.00%	0.00%	NA
Japonica Intermediate	19	100.00%	0.00%	0.00%	0.00%	NA
VI/Aromatic	9	88.90%	0.00%	11.11%	0.00%	NA
Intermediate	231	87.90%	11.00%	1.30%	0.00%	NA

Showing 1 to 13 of 13 entries

Contact

Address: Room B111, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural university, Wuhan, 430070, China

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Search for Variation information by Variation ID:

Flanking Sequence (100 bp) in Reference Genome:

Reverse complement sequence

Allele Frequencies:

RiceVarMap v2.0

Tools

Blast

Design Primer by Variation ID

Design Primer by Region

Haplotype Network Analysis

Varitation Coordinate Convert

Contact