RiceVarMap2

Search for Variation information by Variation ID:

Flanking Sequence (100 bp) in Reference Genome:

CTTGTTCATAGCAAAGGTAAAATGACATTTTCTTTGCCCAATCAAGAATATACAATTTAGTGGGCAACATCAGGCTAGGCTAGATAAAGCTACGAACCGA[G/A]
CAACAAAAGTACTCATGCATGCTAATGTGACAGGAGCAGCAAGGATGGGTGGACCATAAATATCTAACAGCAGCAATGAAGTAATCATGACGCTGATTGA

Reverse complement sequence

TCAATCAGCGTCATGATTACTTCATTGCTGCTGTTAGATATTTATGGTCCACCCATCCTTGCTGCTCCTGTCACATTAGCATGCATGAGTACTTTTGTTG[C/T]
TCGGTTCGTAGCTTTATCTAGCCTAGCCTGATGTTGCCCACTAAATTGTATATTCTTGATTGGGCAAAGAAAATGTCATTTTACCTTTGCTATGAACAAG

Allele Frequencies:

Search:

Populations	Population Size	Frequency of G(primary allele)	Frequency of A(secondary allele)	Frequency of N	Frequency of DEL	Frequency of others Allele
All	774	88.50%	9.00%	2.71%	0.00%	NA
All Indica	492	83.10%	14.10%	3.25%	0.00%	NA
All Japonica	244	98.00%	0.40%	1.64%	0.00%	NA
Aus	7	100.00%	0.00%	0.00%	0.00%	NA
Indica I	492	83.10%	14.10%	3.25%	0.00%	NA
Indica II	215	81.40%	16.30%	2.79%	0.00%	NA
Indica III	21	76.20%	23.80%	0.00%	0.00%	NA
Indica Intermediate	190	78.90%	17.60%	4.21%	0.00%	NA
Temperate Japonica	189	97.90%	0.50%	1.59%	0.00%	NA
Tropical Japonica	36	97.20%	0.00%	2.78%	0.00%	NA
Japonica Intermediate	19	100.00%	0.00%	0.00%	0.00%	NA
VI/Aromatic	9	100.00%	0.00%	0.00%	0.00%	NA
Intermediate	231	82.30%	14.40%	3.90%	0.00%	NA

Showing 1 to 13 of 13 entries

Contact

Address: Room B111, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural university, Wuhan, 430070, China

Comments or Questions? Please contact us. Our website: http://xielab.ncpgr.cn/

Search for Variation information by Variation ID:

Flanking Sequence (100 bp) in Reference Genome:

Reverse complement sequence

Allele Frequencies:

RiceVarMap v2.0

Tools

Blast

Design Primer by Variation ID

Design Primer by Region

Haplotype Network Analysis

Varitation Coordinate Convert

Contact