CCATTGCACCCTCTCGAACGCCAGGATGGAGTCGACGTACCCCTGCGCCAATAATGGCGCAACGGCGGCTGGCTTCTGCGGCTCGCCGGCGGCGGTGGCG[GCCGCCGCCGCCG/GCCGCCGCCGCCGCCG]
TCGTCTTCTTTGCCTCGTCGGCTGATGCCACCGCAGAGGCGTCCATGGATGATGGATCAGTATTCACTTGGAGTGCGTATGTCGACGAACTCGGTTGCTT
AAGCAACCGAGTTCGTCGACATACGCACTCCAAGTGAATACTGATCCATCATCCATGGACGCCTCTGCGGTGGCATCAGCCGACGAGGCAAAGAAGACGA[CGGCGGCGGCGGC/CGGCGGCGGCGGCGGC]
CGCCACCGCCGCCGGCGAGCCGCAGAAGCCAGCCGCCGTTGCGCCATTATTGGCGCAGGGGTACGTCGACTCCATCCTGGCGTTCGAGAGGGTGCAATGG
| Populations | Population Size | Frequency of GCCGCCGCCGCCG(primary allele) | Frequency of GCCGCCGCCGCCGCCG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 93.80% | 0.80% | 5.43% | 0.00% | NA |
| All Indica | 492 | 93.50% | 1.30% | 5.28% | 0.00% | NA |
| All Japonica | 244 | 95.90% | 0.00% | 4.10% | 0.00% | NA |
| Aus | 7 | 57.10% | 0.00% | 42.86% | 0.00% | NA |
| Indica I | 492 | 93.50% | 1.30% | 5.28% | 0.00% | NA |
| Indica II | 215 | 94.90% | 0.50% | 4.65% | 0.00% | NA |
| Indica III | 21 | 81.00% | 5.60% | 14.29% | 0.00% | NA |
| Indica Intermediate | 190 | 91.10% | 2.80% | 6.32% | 0.00% | NA |
| Temperate Japonica | 189 | 95.80% | 0.00% | 4.23% | 0.00% | NA |
| Tropical Japonica | 36 | 94.40% | 0.00% | 5.56% | 0.00% | NA |
| Japonica Intermediate | 19 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 91.30% | 2.30% | 6.49% | 0.00% | NA |