CATCAATTGGCTAACTCGTCAGTCTGTTACCCGGCAGAGATAGCGGAGGATGTGCCAGTCAAGATACGGGATTTCTTCATCCCGGTTGACTTTGTGGTGC[TGGACATGGACAT/TGGACAT]
AGGAAAAGAGACGCCGCTCATCCTGGGTGTCACGCCCTGAAAATCGCCTAAATTAATAATCCATATTTTAAATCATTTTTAGAAATTATTTTAAAAGCCT
AGGCTTTTAAAATAATTTCTAAAAATGATTTAAAATATGGATTATTAATTTAGGCGATTTTCAGGGCGTGACACCCAGGATGAGCGGCGTCTCTTTTCCT[ATGTCCATGTCCA/ATGTCCA]
GCACCACAAAGTCAACCGGGATGAAGAAATCCCGTATCTTGACTGGCACATCCTCCGCTATCTCTGCCGGGTAACAGACTGACGAGTTAGCCAATTGATG
| Populations | Population Size | Frequency of TGGACATGGACAT(primary allele) | Frequency of TGGACAT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 92.20% | 3.40% | 4.52% | 0.00% | NA |
| All Indica | 492 | 91.30% | 3.60% | 5.28% | 0.00% | NA |
| All Japonica | 244 | 95.90% | 2.50% | 1.64% | 0.00% | NA |
| Aus | 7 | 85.70% | 0.00% | 14.29% | 0.00% | NA |
| Indica I | 492 | 91.30% | 3.60% | 5.28% | 0.00% | NA |
| Indica II | 215 | 92.10% | 2.90% | 5.12% | 0.00% | NA |
| Indica III | 21 | 95.20% | 0.00% | 4.76% | 0.00% | NA |
| Indica Intermediate | 190 | 90.50% | 4.40% | 5.26% | 0.00% | NA |
| Temperate Japonica | 189 | 95.20% | 3.20% | 1.59% | 0.00% | NA |
| Tropical Japonica | 36 | 97.20% | 0.00% | 2.78% | 0.00% | NA |
| Japonica Intermediate | 19 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 88.90% | 0.00% | 11.11% | 0.00% | NA |
| Intermediate | 231 | 90.00% | 4.60% | 5.63% | 0.00% | NA |