TGTAAGGGTCAGGACCAAGCTGCCCACATCGCCACCGGCAGCCTCCCCCCGGCCACCGGACACCGACCAGAGAGTGGAACGCGCGGCGCCCGCGTTGCAA[GGATACGGATACGCCAAT/GGATGCGGATACGCCAAT]
GGCGCGGCGCGACGCTGGAGAGGAGAAGCGCGACACGAGCGCGGGAAGCGGACGGAGAGCTCTGGATCGGAGGGGAGGAAAGGGTGGGATGCTGTGCTGG
CCAGCACAGCATCCCACCCTTTCCTCCCCTCCGATCCAGAGCTCTCCGTCCGCTTCCCGCGCTCGTGTCGCGCTTCTCCTCTCCAGCGTCGCGCCGCGCC[ATTGGCGTATCCGTATCC/ATTGGCGTATCCGCATCC]
TTGCAACGCGGGCGCCGCGCGTTCCACTCTCTGGTCGGTGTCCGGTGGCCGGGGGGAGGCTGCCGGTGGCGATGTGGGCAGCTTGGTCCTGACCCTTACA
| Populations | Population Size | Frequency of GGATACGGATACGCCAAT(primary allele) | Frequency of GGATGCGGATACGCCAAT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 78.40% | 12.20% | 10.72% | 0.00% | NA |
| All Indica | 492 | 71.10% | 18.20% | 13.01% | 0.00% | NA |
| All Japonica | 244 | 93.90% | 0.90% | 5.33% | 0.00% | NA |
| Aus | 7 | 71.40% | 16.70% | 14.29% | 0.00% | NA |
| Indica I | 492 | 71.10% | 18.20% | 13.01% | 0.00% | NA |
| Indica II | 215 | 77.20% | 17.00% | 6.98% | 0.00% | NA |
| Indica III | 21 | 44.40% | 47.60% | 14.29% | 0.00% | NA |
| Indica Intermediate | 190 | 64.20% | 26.50% | 12.63% | 0.00% | NA |
| Temperate Japonica | 189 | 94.20% | 0.60% | 5.29% | 0.00% | NA |
| Tropical Japonica | 36 | 94.40% | 0.00% | 5.56% | 0.00% | NA |
| Japonica Intermediate | 19 | 89.50% | 5.60% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 66.20% | 23.90% | 12.99% | 0.00% | NA |