GTTGATGCCATTCATGTGCATGCAAGGTTTGATCTGAACGATCGAGATGGGGATCAAATGAACAGAGTAGTTTAGTTCACGCCAAAATTGAAAGTTTGGC[TGAAATTGA/TGAAATTGG]
AATGATGTGACGGAAAAATTGGAAGTTTGTGTGTAGAAAAGTTTTGATGTGATGGAAAAGTTGGAAGTTTGAAGAAAAATTTGGAACTAAACTCGGCCGT
ACGGCCGAGTTTAGTTCCAAATTTTTCTTCAAACTTCCAACTTTTCCATCACATCAAAACTTTTCTACACACAAACTTCCAATTTTTCCGTCACATCATT[TCAATTTCA/CCAATTTCA]
GCCAAACTTTCAATTTTGGCGTGAACTAAACTACTCTGTTCATTTGATCCCCATCTCGATCGTTCAGATCAAACCTTGCATGCACATGAATGGCATCAAC
| Populations | Population Size | Frequency of TGAAATTGA(primary allele) | Frequency of TGAAATTGG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 76.50% | 18.70% | 5.94% | 0.00% | NA |
| All Indica | 492 | 65.00% | 29.50% | 7.72% | 0.00% | NA |
| All Japonica | 244 | 98.40% | 0.00% | 1.64% | 0.00% | NA |
| Aus | 7 | 71.40% | 16.70% | 14.29% | 0.00% | NA |
| Indica I | 492 | 65.00% | 29.50% | 7.72% | 0.00% | NA |
| Indica II | 215 | 74.00% | 21.30% | 6.05% | 0.00% | NA |
| Indica III | 21 | 42.10% | 52.40% | 9.52% | 0.00% | NA |
| Indica Intermediate | 190 | 56.30% | 37.10% | 10.53% | 0.00% | NA |
| Temperate Japonica | 189 | 98.90% | 0.00% | 1.06% | 0.00% | NA |
| Tropical Japonica | 36 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 89.50% | 0.00% | 10.53% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 61.50% | 31.10% | 10.82% | 0.00% | NA |