GATGAAACTGTAGAGATAGTTGCAATCTTCAGATCATCCTGCAGCATGATATGATATACAGTATATGACCCACCCAATTTAAGGCACATACATTCAGTTC[T/TT]
TTTTTTCCAATGGATCACATCTTTGTTGACGATCAGTTCACAAACTAGTCACAATCACATCGTTATTACTTCTGCTTCTTCAAGCATTCATGTAACATCA
TGATGTTACATGAATGCTTGAAGAAGCAGAAGTAATAACGATGTGATTGTGACTAGTTTGTGAACTGATCGTCAACAAAGATGTGATCCATTGGAAAAAA[A/AA]
GAACTGAATGTATGTGCCTTAAATTGGGTGGGTCATATACTGTATATCATATCATGCTGCAGGATGATCTGAAGATTGCAACTATCTCTACAGTTTCATC
| Populations | Population Size | Frequency of TT(primary allele) | Frequency of T(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 60.60% | 37.40% | 3.23% | 0.00% | NA |
| All Indica | 492 | 77.00% | 20.40% | 3.25% | 0.00% | NA |
| All Japonica | 244 | 27.00% | 70.90% | 2.87% | 0.00% | NA |
| Aus | 7 | 57.10% | 42.90% | 0.00% | 0.00% | NA |
| Indica I | 492 | 77.00% | 20.40% | 3.25% | 0.00% | NA |
| Indica II | 215 | 81.40% | 15.50% | 3.72% | 0.00% | NA |
| Indica III | 21 | 66.70% | 30.00% | 4.76% | 0.00% | NA |
| Indica Intermediate | 190 | 74.70% | 22.80% | 3.16% | 0.00% | NA |
| Temperate Japonica | 189 | 11.50% | 85.70% | 3.17% | 0.00% | NA |
| Tropical Japonica | 36 | 94.40% | 5.60% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 0.00% | 47.40% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 88.90% | 0.00% | 11.11% | 0.00% | NA |
| Intermediate | 231 | 71.40% | 26.00% | 3.46% | 0.00% | NA |