GAATAGATGTGAAGCGAGCAAAGTTAGTAAATGTTGTGAGAAAATAAGGATTCATGATAATCAAAATATTCTTACCATGAAATCGTTGTCGAGAATATTT[GA/GG]
ACAAACAAAGAACCTTCGACCCAATATCGTAGGCTTTATGGAACGAAGAACCTGACAATGGATCCTTCGTGTGAACAAACGGAACCATAGCTAAAGGCCA
TGGCCTTTAGCTATGGTTCCGTTTGTTCACACGAAGGATCCATTGTCAGGTTCTTCGTTCCATAAAGCCTACGATATTGGGTCGAAGGTTCTTTGTTTGT[TC/CC]
AAATATTCTCGACAACGATTTCATGGTAAGAATATTTTGATTATCATGAATCCTTATTTTCTCACAACATTTACTAACTTTGCTCGCTTCACATCTATTC
| Populations | Population Size | Frequency of GG(primary allele) | Frequency of GA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 69.40% | 25.60% | 6.72% | 0.00% | NA |
| All Indica | 492 | 92.50% | 1.30% | 6.30% | 0.00% | NA |
| All Japonica | 244 | 27.50% | 70.10% | 3.28% | 0.00% | NA |
| Aus | 7 | 0.00% | 0.00% | 85.71% | 0.00% | NA; GG: 85.70% |
| Indica I | 492 | 92.50% | 1.30% | 6.30% | 0.00% | NA |
| Indica II | 215 | 93.00% | 1.00% | 6.05% | 0.00% | NA |
| Indica III | 21 | 85.70% | 5.30% | 9.52% | 0.00% | NA |
| Indica Intermediate | 190 | 90.50% | 2.30% | 7.37% | 0.00% | NA |
| Temperate Japonica | 189 | 12.20% | 84.10% | 4.23% | 0.00% | NA |
| Tropical Japonica | 36 | 94.40% | 5.60% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 47.40% | 52.60% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 0.00% | 40.00% | 44.44% | 0.00% | NA; GA: 44.40% |
| Intermediate | 231 | 84.00% | 9.30% | 7.36% | 0.00% | NA |