Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


GGTCGACGCGTCCTCCTCGGTCGCCATGGGAGTGAGGCGTGGTGTGAACAGGGGGAGAGAAATTTTCGATTTGGATCCAGGGAAGAAGACGACTAGTACT[CTCCTCCTCCTC/CTCCTCCTC]
CAAGTAGTAGATAAGAAGAGATGGGGGCGCGTGTATATGCTGCTGCTGAGTATATCGACGAACGCACGCTGACATGTCGGCCATGGTGGAGTGGGGCCCA

Reverse complement sequence

TGGGCCCCACTCCACCATGGCCGACATGTCAGCGTGCGTTCGTCGATATACTCAGCAGCAGCATATACACGCGCCCCCATCTCTTCTTATCTACTACTTG[GAGGAGGAGGAG/GAGGAGGAG]
AGTACTAGTCGTCTTCTTCCCTGGATCCAAATCGAAAATTTCTCTCCCCCTGTTCACACCACGCCTCACTCCCATGGCGACCGAGGAGGACGCGTCGACC

Allele Frequencies:

Populations Population SizeFrequency of CTCCTCCTCCTC(primary allele) Frequency of CTCCTCCTC(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 99.00% 0.60% 0.39% 0.00% NA
All Indica  492 98.80% 0.60% 0.61% 0.00% NA
All Japonica  244 100.00% 0.00% 0.00% 0.00% NA
Aus  7 71.40% 28.60% 0.00% 0.00% NA
Indica I  492 98.80% 0.60% 0.61% 0.00% NA
Indica II  215 100.00% 0.00% 0.00% 0.00% NA
Indica III  21 100.00% 0.00% 0.00% 0.00% NA
Indica Intermediate  190 97.40% 1.60% 1.05% 0.00% NA
Temperate Japonica  189 100.00% 0.00% 0.00% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 97.80% 1.30% 0.87% 0.00% NA