CCTGGTAATCTAGGTTGAAGACGAAACTGGAGGTTAACATGTTGGCAATAATCTTGCAAGCGACCGATATCTATATGTAAAGTTTTTAACTCTCAATCCG[TT/TC]
TTTTAATCTCTTCAATAATTAACGGGAAGTCCTGCCTAAGATGAAAGTAGCCATTGGTGACGGCCACCTTCTTGAAGTTGCTCTCCGCCATCAAGAAGTT
AACTTCTTGATGGCGGAGAGCAACTTCAAGAAGGTGGCCGTCACCAATGGCTACTTTCATCTTAGGCAGGACTTCCCGTTAATTATTGAAGAGATTAAAA[AA/GA]
CGGATTGAGAGTTAAAAACTTTACATATAGATATCGGTCGCTTGCAAGATTATTGCCAACATGTTAACCTCCAGTTTCGTCTTCAACCTAGATTACCAGG
| Populations | Population Size | Frequency of TC(primary allele) | Frequency of TT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 63.70% | 32.10% | 6.20% | 0.00% | NA |
| All Indica | 492 | 94.30% | 1.10% | 4.67% | 0.00% | NA |
| All Japonica | 244 | 6.70% | 86.10% | 7.79% | 0.00% | NA |
| Aus | 7 | 71.40% | 28.60% | 0.00% | 0.00% | NA |
| Indica I | 492 | 94.30% | 1.10% | 4.67% | 0.00% | NA |
| Indica II | 215 | 94.00% | 1.00% | 5.12% | 0.00% | NA |
| Indica III | 21 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 94.20% | 1.60% | 4.21% | 0.00% | NA |
| Temperate Japonica | 189 | 7.40% | 86.20% | 6.88% | 0.00% | NA |
| Tropical Japonica | 36 | 0.00% | 83.30% | 16.67% | 0.00% | NA |
| Japonica Intermediate | 19 | 10.50% | 89.50% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 0.00% | 100.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 82.30% | 12.40% | 6.06% | 0.00% | NA |