Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


GGTTGATCCGGTCGCCGGCGTAGGAGGCGTTGCCCATGAACACGAGGTTTGCGGCGGCGACGTCCCGCCCCACGGCTGCGAAGTCGTAGTCGAAGGAGAG[CGCCGCCGC/CGCCGCCGA]
GGCGCGGAGGGTGGTGCAGCAGAGGAAGAGGTGGAGGAGGACATGGCTGGCCATGTTCATCTGCTTTGCTGGCCACCTTACATTGTTATTGCTGCGGCTA

Reverse complement sequence

TAGCCGCAGCAATAACAATGTAAGGTGGCCAGCAAAGCAGATGAACATGGCCAGCCATGTCCTCCTCCACCTCTTCCTCTGCTGCACCACCCTCCGCGCC[GCGGCGGCG/TCGGCGGCG]
CTCTCCTTCGACTACGACTTCGCAGCCGTGGGGCGGGACGTCGCCGCCGCAAACCTCGTGTTCATGGGCAACGCCTCCTACGCCGGCGACCGGATCAACC

Allele Frequencies:

Populations Population SizeFrequency of CGCCGCCGC(primary allele) Frequency of CGCCGCCGA(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 98.40% 0.40% 1.16% 0.00% NA
All Indica  492 99.20% 0.00% 0.81% 0.00% NA
All Japonica  244 98.40% 0.00% 1.64% 0.00% NA
Aus  7 57.10% 42.90% 0.00% 0.00% NA
Indica I  492 99.20% 0.00% 0.81% 0.00% NA
Indica II  215 99.50% 0.00% 0.47% 0.00% NA
Indica III  21 100.00% 0.00% 0.00% 0.00% NA
Indica Intermediate  190 98.40% 0.00% 1.58% 0.00% NA
Temperate Japonica  189 97.90% 0.00% 2.12% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 98.30% 0.00% 1.73% 0.00% NA