Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


GGGCCTCAGGTAGTTGGTCCACCGGAGCCTACAGCTCTTGCTGCACCGCATCAGCCCTGCAAGCAACCATTTCGACAAACACCTCGCACGCGTCAGAATC[AAGAAGAAGAAGAAG/AAGAAGAAGAAGAAGAAG]
CCATCCTAGCTCAGGCGGTACAAGTGATCGTCACCTGTTCTGGTCGGGACGGCGCGCCAGTTGCCGGGGCCGTGCTCCTGGACGTAGGAGACGAGGACGA

Reverse complement sequence

TCGTCCTCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCGACCAGAACAGGTGACGATCACTTGTACCGCCTGAGCTAGGATGG[CTTCTTCTTCTTCTT/CTTCTTCTTCTTCTTCTT]
GATTCTGACGCGTGCGAGGTGTTTGTCGAAATGGTTGCTTGCAGGGCTGATGCGGTGCAGCAAGAGCTGTAGGCTCCGGTGGACCAACTACCTGAGGCCC

Allele Frequencies:

Populations Population SizeFrequency of AAGAAGAAGAAGAAG(primary allele) Frequency of AAGAAGAAGAAGAAGAAG(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 96.50% 2.10% 1.42% 0.00% NA
All Indica  492 95.70% 2.30% 2.03% 0.00% NA
All Japonica  244 100.00% 0.00% 0.00% 0.00% NA
Aus  7 28.60% 71.40% 0.00% 0.00% NA
Indica I  492 95.70% 2.30% 2.03% 0.00% NA
Indica II  215 99.10% 0.00% 0.93% 0.00% NA
Indica III  21 95.20% 0.00% 4.76% 0.00% NA
Indica Intermediate  190 94.20% 3.80% 2.11% 0.00% NA
Temperate Japonica  189 100.00% 0.00% 0.00% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 94.80% 3.10% 2.16% 0.00% NA