RiceVarMap2

Search for Variation information by Variation ID:

Flanking Sequence (100 bp) in Reference Genome:

GCCATCAGCGAAGCCGTGAAGAACACGACGCGACCACCACCACCACCACCACCGCCACCACCGGCGTCGGCAGATCGAGACGGCGACACTCTCCTCCTCC[TCG/TCC]
TCGTCGCCAGCGAGCGCACGCGGCGGAGCCGTGATCGCGAGACACCCGTGGTGGTGGTGGTGGTGACAGCAATCGAAAAAGAAAAAAAAAACCAAAAAAA

Reverse complement sequence

TTTTTTTGGTTTTTTTTTTCTTTTTCGATTGCTGTCACCACCACCACCACCACGGGTGTCTCGCGATCACGGCTCCGCCGCGTGCGCTCGCTGGCGACGA[CGA/GGA]
GGAGGAGGAGAGTGTCGCCGTCTCGATCTGCCGACGCCGGTGGTGGCGGTGGTGGTGGTGGTGGTGGTCGCGTCGTGTTCTTCACGGCTTCGCTGATGGC

Allele Frequencies:

Search:

Populations	Population Size	Frequency of TCG(primary allele)	Frequency of TCC(secondary allele)	Frequency of N	Frequency of DEL	Frequency of others Allele
All	774	47.30%	47.80%	9.43%	0.00%	NA
All Indica	492	51.00%	43.80%	9.15%	0.00%	NA
All Japonica	244	44.30%	50.00%	10.25%	0.00%	NA
Aus	7	28.60%	71.40%	0.00%	0.00%	NA
Indica I	492	51.00%	43.80%	9.15%	0.00%	NA
Indica II	215	72.10%	23.30%	6.05%	0.00%	NA
Indica III	21	95.20%	4.80%	0.00%	0.00%	NA
Indica Intermediate	190	45.30%	49.70%	10.00%	0.00%	NA
Temperate Japonica	189	49.70%	45.00%	9.52%	0.00%	NA
Tropical Japonica	36	0.00%	88.90%	11.11%	0.00%	NA
Japonica Intermediate	19	18.80%	68.40%	15.79%	0.00%	NA
VI/Aromatic	9	33.30%	66.70%	0.00%	0.00%	NA
Intermediate	231	49.50%	45.00%	10.82%	0.00%	NA

Showing 1 to 13 of 13 entries

Contact

Address: Room B111, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural university, Wuhan, 430070, China

Comments or Questions? Please contact us. Our website: http://xielab.ncpgr.cn/

Search for Variation information by Variation ID:

Flanking Sequence (100 bp) in Reference Genome:

Reverse complement sequence

Allele Frequencies:

RiceVarMap v2.0

Tools

Blast

Design Primer by Variation ID

Design Primer by Region

Haplotype Network Analysis

Varitation Coordinate Convert

Contact